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ARGÜELLO, Rafael José. (24/12/1982)

CRCN (2018), CNRS, France (Tenured)

Marseille-Luminy Immunology Center (CIML), Marseille.

ORCID: https://orcid.org/0000-0001-9785-3883

Emerging leadership scholar, International Society for the Advancement of Cytometry (ISAC)

Co-founder of the European ImmunoMetabolism Network – Communications workgroup leader

Co-founder of GammaOmics – (Scientific advisor)

Molecular Immunologist & Innovator. I am a molecular immunologist and Research Scientist (CRCN) at CNRS in Marseille, leading the Metabolic Regulation of Immunity team, (hosted by PPlab, CIML). My scientific path began with a PhD in Human Immunology from the University of Buenos Aires, where limited resources fostered a commitment to innovation. I continued with postdoctoral training at CIML (PP-lab) and the University of California, San Francisco (UCSF), focusing on translation control, epi-transcriptomics, and human cancer immunometabolism.

My research seeks to understand how metabolic changes regulate long-term immune programming through epigenetic mechanisms. To achieve this, I develop and apply innovative single-cell and spatial methods. I am the inventory of SCENITH™, a patented and widely adopted assay for functional metabolic profiling, and I have expanded this approach into derivatives such as Epic-SCENITH and Spatial-SCENITH. These tools are now used to dissect therapy resistance in leukemia, tumor–immune interactions in glioblastoma, and long-term immune dysfunction after sepsis. I have organized multiple educational workshops and trained students at all levels.

Alongside academic work, I co-founded GammaOmics, a biotechnology start-up that holds the exclusive license for SCENITH™, extending CNRS innovation into the field of personalized medicine. I am part of the steering committee and also serve as communications lead of the European ImmunoMetabolism Network, where I help to coordinate training, collaborations, and dissemination across more than 400 researchers in Europe.

My goal is to continue bridging fundamental immunology with translational applications, advancing both mechanistic knowledge and the development of biomarkers and therapeutic strategies. By combining methodological innovation, clinical collaborations, and international leadership, I aim to strengthen the visibility and impact of CNRS in the emerging field of human immunometabolism.

Projects

Project
2025
Epic-SCENITH: regulators of metabolism and epigenetics in glioblastoma-associated myeloid cells

Duration: 2021–2025.Partners & funding amounts: APHM/La Timone (E. Tabouret); amount for team: 325 k€.Responsibilities: PI–coordinator (only beneficiary)Theme & content of […]

Rafael J ARGUELLO
Project
2025
MetaNiche (Spatial-SCENITH) Metabolic niches regulate hematopoiesis (MetaNiche, ANR-22-CE15-0015-02).

Bone marrow metabolic niches regulate hematopoiesis (MetaNiche, ANR-22-CE15-0015-02). Duration: 2023–2027 (42 months).Partners & funding amounts: Institut Curie (L. Perié), Institut […]

Rafael J ARGUELLO
Project
2025
Biomarkers established to stratify sepsis long-term adverse effects to improve patients' survivorship (BEATsep)

Full title & acronym: Biomarkers established to stratify sepsis long-term adverse effects to improve patients' survivorship (BEATsep).Duration: 2024–2029 (60 months).Partners […]

Rafael J ARGUELLO
Project
2025
UNLIMITED – MSCA doctoral network UNLIMITED (Europe)

Full title & acronym: Understanding lipid immunometabolism to treat disease (UNLIMITED).Duration: 2025–2029 (48 months).Partners & funding amounts: Consortium led by […]

Rafael J ARGUELLO
Project
2025
INCa PL-Bio CARIBBEAN

Anti-GD3 CAR-NK cells to overcome therapeutic resistance in glioblastoma (Caribbean). Type: National.Duration: 2025–2029 (48 months).Partners & funding amounts: INP-APHM (E. […]

Rafael J ARGUELLO
Project
2025
IMAGINe – High Risk High Gain IMAGINe (France)

Targeting intratumor metabolic heterogeneity in neuroblastoma to develop innovative treatments (IMAGINe) Type: National.Duration: 2024–2029 (48 months).Partners & funding amounts: CRCM […]

Rafael J ARGUELLO
Project
2025
TALETE (Transcan-3 ERA-NET, Europe)

Targeting acute myeloid leukemia immunosuppressive microenvironment by combined IDO1 inhibition and PD-1 blockade Type: European.Duration: 2023–2027 (36 months).Partners & funding […]

Rafael J ARGUELLO
Project
2025
South-ROCK – SIRIC

South-Research On Cancer for Kids. INCA Pediacriex (France) Type: National (integrated cancer site).Full title & acronym: South-Research On Cancer for […]

Rafael J ARGUELLO
Project
2025
CARma project (INCa PL-Bio)

Tailoring CAR T-cell metabolism and activation to enhance therapeutic efficacy (CARma) Type: National.Duration: 2025–2029.Partners & funding amounts: CRCM (R. Lasserre); […]

Rafael J ARGUELLO

Publications

2024
Julien Gigan, Paulina Garcia-Gonzalez, Lou Galliot, Alexandre Reynaud, Yoan Ghaffar, Eve Seillier, R..., Single-Nuclei Analysis of the Unfolded Protein Response (SNUPR): A Novel Method revealing bortezomib resistance mechanisms in Multiple Myeloma, 2024.
2024
Rachel Coulombeau, Claudia Selck, Nicolas Giang, Abdulrahman Al-Mohammad, Natalie Ng, Allison K Mahe..., Sphingosine‐1‐Phosphate Signaling Inhibition Suppresses Th1‐Like Treg Generation by Reversing Mitochondrial Uncoupling, <i>Immunology</i>, 2024, 174 (1), pp.153-166. <a target="_blank" href="https://dx.doi.org/10.1111/imm.13870">⟨10.1111/imm.13870⟩</a>.
2024
Alexandre Gallerand, Bastien Dolfi, Marion I Stunault, Zakariya Caillot, Alexia Castiglione, Axelle ..., Glucose metabolism controls monocyte homeostasis and migration but has no impact on atherosclerosis development in mice, <i>Nature Communications</i>, 2024, 15, <a target="_blank" href="https://dx.doi.org/10.1038/s41467-024-53267-5">⟨10.1038/s41467-024-53267-5⟩</a>.
2024
Daniela Barros, Beatriz Ferreira, Paulina Garcia-Gonzalez, Francesco Carbone, Marine Luka, Fátima L..., Induction of the ISR by AB5 subtilase cytotoxin drives type-I IFN expression in pDCs via STING activation, <i>BioRxiv</i>, 2024, <a target="_blank" href="https://dx.doi.org/10.1101/2024.10.07.616986">⟨10.1101/2024.10.07.616986⟩</a>.
2024
Paulo Antas, Mariana Machado, Fátima Leite-Pinheiro, Daniela Barros, Carlota Ramalhinho, Andreia Me..., VPS34-IN1 inhibits cap-mediated translation and synergizes with STING to drive type-I IFN expression in human plasmacytoid DCs, <i>BioRxiv</i>, 2024, <a target="_blank" href="https://dx.doi.org/10.1101/2024.06.17.599308">⟨10.1101/2024.06.17.599308⟩</a>.
2024
Adrien Krug, Rana Mhaidly, Marie Tosolini, Laura Mondragon, Gamze Tari, Adriana Martinez Turtos, Rac..., Dependence on mitochondrial respiration of malignant T cells reveals a new therapeutic target for angioimmunoblastic T-cell lymphoma, <i>Cell Death Discovery</i>, 2024, 10 (1), pp.292. <a target="_blank" href="https://dx.doi.org/10.1038/s41420-024-02061-9">⟨10.1038/s41420-024-02061-9⟩</a>.
2024
Chris Marco Mbianda Nana, Bodin Darcisse Kwanou Tchakounté, Bernard Marie Zambo Bitye, Balotin Foga..., Phenotypic changes of γδ T cells in Plasmodium falciparum placental malaria and pregnancy outcomes in women at delivery in Cameroon, <i>Frontiers in Immunology</i>, 2024, 15, <a target="_blank" href="https://dx.doi.org/10.3389/fimmu.2024.1385380">⟨10.3389/fimmu.2024.1385380⟩</a>.
2024
Jason Cosgrove, Antoine Marçais, Felix Hartmann, Andreas Bergthaler, Ivan Zanoni, Mauro Corrado, Le..., Unlocking Single-Cell Immunometabolism Research: A Call for Accessible Tools, <i>Nature Metabolism</i>, 2024, 6 (5), pp.779-782. <a target="_blank" href="https://dx.doi.org/10.1038/s42255-024-01031-w">⟨10.1038/s42255-024-01031-w⟩</a>.
2024
Sara de Biasi, Domenico Lo Tartaro, Anita Neroni, Moritz Rau, Nikolaos Paschalidis, Rebecca Borella,..., Immunosenescence and vaccine efficacy revealed by immunometabolic analysis of SARS-CoV-2-specific cells in multiple sclerosis patients, <i>Nature Communications</i>, 2024, 15, <a target="_blank" href="https://dx.doi.org/10.1038/s41467-024-47013-0">⟨10.1038/s41467-024-47013-0⟩</a>.
2024
Marta Iborra-Pernichi, Jonathan Ruiz García, María Velasco de la Esperanza, Belén S Estrada, Elen..., Defective mitochondria remodeling in B cells leads to an aged immune response, <i>Nature Communications</i>, 2024, 15, <a target="_blank" href="https://dx.doi.org/10.1038/s41467-024-46763-1">⟨10.1038/s41467-024-46763-1⟩</a>.
2024
Fátima Merech, Soledad Gori, Guillermina Calo, Vanesa Hauk, Daniel Paparini, Daiana Rios, Brenda La..., Monocyte immunometabolic reprogramming in human pregnancy: contribution of trophoblast cells, <i>AJP - Endocrinology and Metabolism</i>, 2024, 326 (3), pp.E215-E225. <a target="_blank" href="https://dx.doi.org/10.1152/ajpendo.00357.2023">⟨10.1152/ajpendo.00357.2023⟩</a>.
2024
Atsuko Ibusuki, Kazuhiro Kawai, Ayano Nitahara-Takeuchi, Rafael J Argüello, Takuro Kanekura, TCR signaling and cellular metabolism regulate the capacity of murine epidermal γδ T cells to rapidly produce IL-13 but not IFN-γ, <i>Frontiers in Immunology</i>, 2024, 15, <a target="_blank" href="https://dx.doi.org/10.3389/fimmu.2024.1361139">⟨10.3389/fimmu.2024.1361139⟩</a>.
2024
J Tucker Andrews, Zijing Zhang, GVR Krishna Prasad, Fischer Huey, Evgeniya V Nazarova, Jocelyn Wan..., Metabolically active neutrophils represent a permissive niche for Mycobacterium tuberculosis, <i>Mucosal Immunology</i>, 2024, 17 (5), pp.825 - 842. <a target="_blank" href="https://dx.doi.org/10.1016/j.mucimm.2024.05.007">⟨10.1016/j.mucimm.2024.05.007⟩</a>.
2024
Sara de Biasi, Julien Paul Gigan, Rebecca Borella, Elena Santacroce, Domenico Lo Tartaro, Anita Nero..., Cell metabolism: Functional and phenotypic single cell approaches, <i>Methods in Cell Biology</i>, 2024, Methods in Cell Biology, 186, pp.151-187. <a target="_blank" href="https://dx.doi.org/10.1016/bs.mcb.2024.02.024">⟨10.1016/bs.mcb.2024.02.024⟩</a>.
2024
Mariano Maio, Joaquina Barros, Marine Joly, Zoï Vahlas, José Luis Marín Franco, Melanie Genoula, ..., Elevated glycolytic metabolism of monocytes limits the generation of HIF1A-driven migratory dendritic cells in tuberculosis, <i>eLife</i>, 2024, 12 (8), pp.e1011559. <a target="_blank" href="https://dx.doi.org/10.7554/eLife.89319">⟨10.7554/eLife.89319⟩</a>.
2023
Erica Tagliatti, Genni Desiato, Sara Mancinelli, Matteo Bizzotto, Maria C Gagliani, Elisa Faggiani, ..., Trem2 expression in microglia is required to maintain normal neuronal bioenergetics during development, <i>Immunity</i>, 2023, 57, pp.86 - 105.e9. <a target="_blank" href="https://dx.doi.org/10.1016/j.immuni.2023.12.002">⟨10.1016/j.immuni.2023.12.002⟩</a>.
2023
Juraj Adamik, Paul V Munson, Deena M Maurer, Felix J Hartmann, Sean C Bendall, Rafael J Argüello, L..., Immuno-metabolic dendritic cell vaccine signatures associated with overall survival in vaccinated melanoma patients, <i>Nature Communications</i>, 2023, 14 (1), pp.7211. <a target="_blank" href="https://dx.doi.org/10.1038/s41467-023-42881-4">⟨10.1038/s41467-023-42881-4⟩</a>.
2023
Nyam-Osor Chimge, Min-Hsuan Chen, Cu Nguyen, Yuqi Zhao, Xiwei Wu, Paulina Garcia Gonzalez, Heather O..., A Deeply Quiescent Subset of CML LSC depends on FAO yet Avoid Deleterious ROS by Suppressing Mitochondrial Complex I, <i>Current Molecular Pharmacology</i>, 2023, 17, <a target="_blank" href="https://dx.doi.org/10.2174/1874467217666230906092236">⟨10.2174/1874467217666230906092236⟩</a>.
2023
Sevgi Kostel Bal, Sarah Giuliani, Jana Block, Peter Repiscak, Christoph Hafemeister, Tala Shahin, Nu..., Biallelic NFATC1 mutations cause an inborn error of immunity with impaired CD8+ T-cell function and disrupted glycolysis, <i>Blood</i>, 2023, 142 (9), pp.827-845. <a target="_blank" href="https://dx.doi.org/10.1182/blood.2022018303">⟨10.1182/blood.2022018303⟩</a>.
2023
Julian Swatler, Domenico Lo Tartaro, Rebecca Borella, Marta Brewinska-Olchowik, Annamaria Paolini, A..., Dysfunctional subsets of CD39+ T cells, distinct from PD-1+, driven by leukemic extracellular vesicles in myeloid leukemias, <i>Haematologica</i>, 2023, 108 (3), pp.909-916. <a target="_blank" href="https://dx.doi.org/10.3324/haematol.2022.281713">⟨10.3324/haematol.2022.281713⟩</a>.
2023
Jason Cosgrove, Anne-Marie Lyne, Ildefonso Rodriguez, Vincent Cabeli, Cecile Conrad, Sabrina Tenreir..., Metabolically Primed Multipotent Hematopoietic Progenitors Fuel Innate Immunity, 2023.
2023
Hanna S Hong, Nneka E Mbah, Mengrou Shan, Kristen Loesel, Lin Lin, Peter Sajjakulnukit, Luis O Corre..., OXPHOS promotes apoptotic resistance and cellular persistence in TH 17 cells in the periphery and tumor microenvironment, <i>Science Immunology</i>, 2023, 7, <a target="_blank" href="https://dx.doi.org/10.1126/sciimmunol.abm8182">⟨10.1126/sciimmunol.abm8182⟩</a>.
2022
Allison K Maher, Katie L Burnham, Emma M Jones, Michelle MH Tan, Rocel C Saputil, Laury Baillon, Cl..., Transcriptional reprogramming from innate immune functions to a pro-thrombotic signature by monocytes in COVID-19, <i>Nature Communications</i>, 2022, 13, <a target="_blank" href="https://dx.doi.org/10.1038/s41467-022-35638-y">⟨10.1038/s41467-022-35638-y⟩</a>.
2022
Chloé Michaudel, Camille Danne, Allison Agus, Aurélie Magniez, Anne Aucouturier, Madeleine Spatz, ..., Rewiring the altered tryptophan metabolism as a novel therapeutic strategy in inflammatory bowel diseases, <i>Gut</i>, 2022, 1-12, pp.gutjnl-2022-327337. <a target="_blank" href="https://dx.doi.org/10.1136/gutjnl-2022-327337">⟨10.1136/gutjnl-2022-327337⟩</a>.
2022
Bastien Dolfi, Alexandre Gallerand, Maria Firulyova, Yingzheng Xu, Johanna Merlin, Adélie Dumont, A..., Unraveling the sex-specific diversity and functions of adrenal gland macrophages, <i>Cell Reports</i>, 2022, 39 (11), pp.110949. <a target="_blank" href="https://dx.doi.org/10.1016/j.celrep.2022.110949">⟨10.1016/j.celrep.2022.110949⟩</a>.
2022
Sanne GS Verberk, Kyra de Goede, Friederike Gorki, Xanthe AMH van Dierendonck, Rafael J Argüel..., An integrated toolbox to profile (macrophage) immunometabolism, <i>Cell Reports Methods</i>, 2022, 2 (4), pp.100192. <a target="_blank" href="https://dx.doi.org/10.1016/j.crmeth.2022.100192">⟨10.1016/j.crmeth.2022.100192⟩</a>.
2022
Dan Corral, Alison Charton, Maria Z Krauss, Eve Blanquart, Florence Levillain, Emma Lefrançais, Tam..., ILC precursors differentiate into metabolically distinct ILC1-like cells during Mycobacterium tuberculosis infection, <i>Cell Reports</i>, 2022, 39 (3), pp.110715. <a target="_blank" href="https://dx.doi.org/10.1016/j.celrep.2022.110715">⟨10.1016/j.celrep.2022.110715⟩</a>.
2022
Adriana Mujal, Alexis Combes, Arjun Rao, Mikhail Binnewies, Bushra Samad, Jessica Tsui, Alexandre Bo..., Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer, <i>Cancer Immunology Research</i>, 2022, 10 (4), pp.403-419. <a target="_blank" href="https://dx.doi.org/10.1158/2326-6066.CIR-21-0588">⟨10.1158/2326-6066.CIR-21-0588⟩</a>.
2022
Carine Jiguet-Jiglaire, Sebastien Boissonneau, Emilie Denicolai, Victoria Hein, Romain Lasseur, Jose..., Plasmatic MMP9 released from tumor-infiltrating neutrophils is predictive for bevacizumab efficacy in glioblastoma patients: an AVAglio ancillary study, <i>Acta Neuropathologica Communications</i>, 2022, 10 (1), pp.1. <a target="_blank" href="https://dx.doi.org/10.1186/s40478-021-01305-4">⟨10.1186/s40478-021-01305-4⟩</a>.
2022
Alexis Combes, Bushra Samad, Jessica Tsui, Nayvin Chew, Peter Yan, Gabriella Reeder, Divyashree Kush..., Discovering dominant tumor immune archetypes in a pan-cancer census, <i>Cell</i>, 2022, 185 (1), pp.184-203.e19. <a target="_blank" href="https://dx.doi.org/10.1016/j.cell.2021.12.004">⟨10.1016/j.cell.2021.12.004⟩</a>.
2022
Camille Danne, Chloé Michaudel, Jurate Skerniskyte, Julien Planchais, Aurélie Magniez, Allison Agu..., CARD9 in neutrophils protects from colitis and controls mitochondrial metabolism and cell survival, <i>Gut</i>, 2022, pp.gutjnl-2022-326917. <a target="_blank" href="https://dx.doi.org/10.1136/gutjnl-2022-326917">⟨10.1136/gutjnl-2022-326917⟩</a>.
2021
Dan Corral, Alison Charton, Maria Z Krauss, Eve Blanquart, Florence Levillain, Emma Lefrançais, Tam..., Metabolic regulation of ILC2 differentiation into ILC1-like cells during Mycobacterium tuberculosis infection, 2021.
2021
Sanne GS Verberk, Kyra E de Goede, Friederike S Gorki, Xanthe a MH van Dierendonck, Rafael J Argü..., A toolbox to profile immunometabolism tested in macrophages, 2021.
2021
Claudie Bosc, Estelle Saland, Aurélie Bousard, Noémie Gadaud, Marie Sabatier, Guillaume Cognet, Th..., Mitochondrial inhibitors circumvent adaptive resistance to venetoclax and cytarabine combination therapy in acute myeloid leukemia, <i>Nature Cancer</i>, 2021, 2 (11), pp.1204-1223. <a target="_blank" href="https://dx.doi.org/10.1038/s43018-021-00264-y">⟨10.1038/s43018-021-00264-y⟩</a>.
2021
Rafael J Argüello, Alexis Combes, Bushra Samad, Jessica Tsui, Nayvin Chew, Peter Yan, Gabriella Ree..., A Pan-Cancer Census of Dominant Tumor Immune Archetypes, 2021.
2021
Rafael J Argüello, Energetic metabolism profiling with single cell resolution, 54th Annual meeting of the Society for Leukocyte Biology “Immunometabolism: Fueling the flame of Aging, Cancer and Immunity” , Jun 2021, London, United Kingdom.
2021
Rafael J Argüello, Profiling energetic metabolism and epigenetics by Flow cyometry, 4th Edition: Metabolism and Cancer. https://www.metabolism-cancer.com/program/ , May 2021, Bordeaux, France.
2021
Adriana M Mujal, Alexis J Combes, Arjun R Rao, Mikhail Binnewies, Bushra Samad, Jessica Tsui, Alexan..., Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer, 2021.