

Facility: Cytometry
About
The cytometry platform: expertise and reliability at the service of research
The cytometry platform aims to support researchers in setting up robust and reproducible experiments. It constitutes a reference space where technical expertise and scientific support combine to guarantee the quality and reliability of data.
Founded in 1976 with the creation of the Immunology Center, the Cytometry Service operates with two engineers, Sylvain Bigot (department manager) and Laurence Borge. Scientific responsibility is assured by Cyrille MionnetThe service is assisted by a steering committee, made up of advanced users, which meets every month.
Our services are structured around four axes:
Development of data processing and preparation workflows, integrating quality control, compensation and standardization, for reliable analyses whatever the software environment.
Design and optimization of multiparametric panels, in order to produce data that can be used in conventional and multidimensional analyses.
Provision of validated protocols, covering the essential steps of sample preparation, antibody titration and the study of key cellular processes such as apoptosis and the cell cycle.
Standardization and monitoring of instruments, ensuring the stability and comparability of acquisitions over time.
The main missions of the service are as follows:
- Cell sorting under biological conditions of any type of cells in any medium: 1.5 ml to 15 ml tube or multi-well plates (96 or 384 wells). Sorting is carried out under conditions optimizing cell viability.
- Quality control and maintenance of instruments.
- User training: Users are trained to become self-sufficient on all of the department's analyzers. The training consists of two modules: a theoretical module and a practical module on an analyzer. Beginner users are then assisted in starting their own experiments.
- Advice and assistance for cytometry experiments, data analysis and cell sorting.
- Evaluation of new cell analysis and sorting technologies to maintain cytometry at the highest level in the department.
- Development and optimization of analyzers and sorters: modification of instruments for optimal detection of fluorescent probes and proteins.
The service has an online booking calendar and a network of servers for secure data storage.
Training
Beyond these services, the platform places training and support for users at the heart of its mission. It ensures that best practices are transmitted and applied, thus guaranteeing methodological rigor and reproducibility of results. Training adapted to the needs and cytometry level of each user is offered by the platform: Conventional multiparametric cytometry, spectral cytometry, cell sorting.
Open Science
Through this approach, the platform contributes directly to the scientific excellence of research projects and to strengthening the quality of data generated in cytometry.
Projects
Project: DECITIP Plasmacytoid dendritic cells (pDCs) excel in the production of type I and III interferons (IFN), […]


Our health depends on a delicate balance between immune defense against pathogens and tolerance to […]


Project: CholControl You are what your mother ate Transgenerational impact of maternal diets via the regulation of RORγt activity […]

Lymph nodes are formed in the embryo by Lymphoid Tissue Inducer (LTi) cells. LTi cells arise not from the yolk […]

Innate immune cells are essential partners of the central nervous system, supporting both homeostasis and repair. Within the brain, perivascular […]

Project: TREATLIVMETS Liver metastases occur in nearly 50% of cancer patients, particularly in […]

Project: Treating Breast Cancer Breast cancer is the most frequently diagnosed cancer in women in […]

Project: pDCComp Individuals infected with viruses or suffering from inflammatory diseases develop a set of behavioral disorders […]

Project: PLBIO 2024 Coordinator: Thierry Walzer, CIRI, Lyon. Other participant: Nathalie Bendriss-Vermare, CRCL, Lyon. Abstract: Natural Killer cells […]

Project: ACLAMADABREC Partly through their effectiveness in activating natural killer (NK) cells and CD8 T lymphocytes […]

Project: MITI Other participants: Magali Richard, LIG, Grenoble; Lionel Spinelli, CB2M hub of CIML. Summary: This project aims to […]

Project: UNFIRE Other participants: Ciphe (Ana Zarubica), Hospices Civils de Lyon and CIRI (Sophie Trouillet-Assant, Thierry Walzer), CoVir team […]





Project: PLBIO-25 Coordinator: Marianne BURBAGE, Institut Curie, Paris. Other participant: Andrew GRIFFITHS, ESPCI, Paris. The effectiveness of CD8 T lymphocytes […]

Project: DCFUNDEVSCREEN Abstract: Studies in mice have shown the key antiviral/tumor role of plasmacytoid dendritic cells (pDCs) […]

Project: RIPIREVI Other participants: CIPHE (Ana Zarubica and colleagues). Abstract: Type I interferons (IFN-Is) are essential for […]


Project: LYMPHOMATLAS Single-cell multi-omic studies in B-lymphomas have highlighted a […]


Project: NRegSkin Project leader: Mei LI (IGBMC, Strasbourg). Other participants: Katia Boniface, Julien Seneschal (University of Bordeaux). Summary: The skin […]

The progression of follicular lymphoma is marked by iterative cycles of remission and relapse, the latter usually resulting from the […]

Project: ICARO Current acellular vaccines are mostly effective against extracellular pathogens, but fail to induce a response […]


Project: PPTuft This project coordinated by Philippe Jay (IGF, Montpellier) in partnership with our team aims to determine the […]

Project: Myfunbat The project aims to define the diversity and functions of brown adipose tissue (BAT) macrophages, […]

Project: EndoPos The EndoPos project explores the role of the GDPD2 enzyme, produced in particular by pulp fibroblasts […]

Project: T-MAC The T-MAC project aims to understand how testicular macrophages and their niches contribute to the maintenance of […]

Project: NICHE The NICHE project explores the concept that macrophages (Macs) depend on local niches formed by […]

Project: Path Finder This project aims to characterize the spatio-temporal development of type I dendritic cells (cDC1) in […]

Project: DeCoDis In the context of a European consortium, we are investigating the dynamics and function of border-associated macrophages […]

Project: IMPACT Sensors Other participants: IGBMC, Strasbourg (Nicolas Charlet-Berguerand) and Institut Curie, Paris (Franck Perez). Duration 2025 – […]

Partner: University of Milan, Italy (Prof. Angelo Poletti, DISFEB) Frameshift mutations in HSPB8 cause neuromyopathies by disrupting […]

CNRS – University of Melbourne Graduate Research Projects The project investigates the molecular interplay between the E3-ubiquitin ligase MARCH1 and […]

Bone marrow metabolic niches regulate hematopoiesis (MetaNiche, ANR-22-CE15-0015-02). Duration: 2023–2027 (42 months).Partners & funding amounts: Institut Curie (L. Perié), Institut […]

Full title & acronym: Biomarkers established to stratify sepsis long-term adverse effects to improve patients' survivorship (BEATsep).Duration: 2024–2029 (60 months).Partners […]

Targeting intratumor metabolic heterogeneity in neuroblastoma to develop innovative treatments (IMAGINe) Type: National.Duration: 2024–2029 (48 months).Partners & funding amounts: CRCM […]

Targeting acute myeloid leukemia immunosuppressive microenvironment by combined IDO1 inhibition and PD-1 blockade Type: European.Duration: 2023–2027 (36 months).Partners & funding […]

South-Research On Cancer for Kids. INCA Pediacriex (France) Type: National (integrated cancer site).Full title & acronym: South-Research On Cancer for […]

The host response to pathogens is orchestrated by the immune system and the nervous system, both present in […]

We have demonstrated that the neurokine TAFA4, produced by sensory neurons in the skin, can promote tissue repair […]

Beyond the pain perception processes that are induced in the event of injury or infection of the […]

Duration: 2021–2025.Partners & funding amounts: APHM/La Timone (E. Tabouret); amount for team: 325 k€.Responsibilities: PI–coordinator (only beneficiary)Theme & content of […]

Anti-GD3 CAR-NK cells to overcome therapeutic resistance in glioblastoma (Caribbean). Type: National.Duration: 2025–2029 (48 months).Partners & funding amounts: INP-APHM (E. […]

The GCselection project, coordinated by Dr. Pierre Milpied (CIML), revisits the mechanisms of antibody maturation in centers […]


Equipments
Conventional cell sorter 4 lasers, 17 colors
Conventional cell sorter 5 lasers, 18 colors
Conventional 3-laser, 8-color cytometer
Conventional 4-laser, 16-color cytometer
Conventional 5-laser, 18-color cytometer
Conventional cytometer with 4 lasers and 18 colors
3 lasers P3 Laboratory Fiancé by ITMO Cancer
5-laser spectral cytometer
Conventional cell sorter 3 lasers 9 colors in BSL3 Equipment funded by ITMO Cancer